PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00009319-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 249aa    MW: 28077.4 Da    PI: 10.6342
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00009319-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.6e-11757146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                      +++WT eE+  l ++v+++G+g W++I r          R+  ++k++w++
  PSME_00009319-RA  7 KQKWTHEEEAALRNGVEKYGPGKWRAILRDPTwssclASRSNVDLKDKWRN 57
                      79****************************99*****9************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.976163IPR017930Myb domain
SuperFamilySSF466891.24E-16474IPR009057Homeodomain-like
SMARTSM007172.1E-7661IPR001005SANT/Myb domain
PfamPF002492.0E-8757IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-14758IPR009057Homeodomain-like
CDDcd116601.82E-18858No hitNo description
SMARTSM005268.3E-13131196IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150423.309132201IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467858.71E-14136214IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.3E-17138216IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.5E-11138204IPR005818Linker histone H1/H5, domain H15
CDDcd000735.88E-11140204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MQMGAPKQKW THEEEAALRN GVEKYGPGKW RAILRDPTWS SCLASRSNVD LKDKWRNMSV  60
TANGWGSREK ARLALKRSKS IAKQSGRQLA LSALNNGNMD VVLVTKPLTT VNPYLPSSNK  120
RCISRLCNSM SICLSRLDKL ILDAVSTLKE PNGSSKSAIA TYIEENQYPP PNFRRMLSSK  180
LKSLVISEKL VKIRQNYMIS GSFRSDDEKA SKSEKEEKHV TILSKNTSKK NKFSFDPVIM  240
FISFSQQEV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1130241e-165BT113024.1 Picea glauca clone GQ03324_K18 mRNA sequence.
GenBankEF6783841e-165EF678384.1 Picea sitchensis clone WS02919_A17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011623052.14e-76PREDICTED: telomere repeat-binding factor 1 isoform X1
RefseqXP_011623053.14e-76PREDICTED: telomere repeat-binding factor 1 isoform X2
RefseqXP_011623054.14e-76PREDICTED: telomere repeat-binding factor 1 isoform X2
SwissprotQ8VWK43e-61TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLB8LR631e-137B8LR63_PICSI; Putative uncharacterized protein
STRINGGSMUA_Achr6P31260_0011e-62(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-62telomere repeat binding factor 1